GgaEX0006930 @ galGal4
Exon Skipping
Gene
ENSGALG00000005066 | DPM2
Description
dolichol phosphate-mannose biosynthesis regulatory protein [Source:RefSeq peptide;Acc:NP_001186093]
Coordinates
chr17:4865441-4866838:+
Coord C1 exon
chr17:4865441-4865470
Coord A exon
chr17:4865605-4865694
Coord C2 exon
chr17:4866736-4866838
Length
90 bp
Sequences
Splice sites
3' ss Seq
GACTCTCTCTCCCTTTGCAGGCC
3' ss Score
12.99
5' ss Seq
CTGGTACGG
5' ss Score
8.6
Exon sequences
Seq C1 exon
GCGGAAGGGCTCTCGGTGGCCGTCGCCATG
Seq A exon
GCCACGGCGACGGACCGGGCGGTAGGGTTCGGCTTGGTGGCCTTCAGCCTCATTCTCTTCGTATACTACACGCTGTGGATCATCGTGCTG
Seq C2 exon
CCCTTCATCGACAGCGACCACAGCATCCACCAATACTTCTTGCCCAGGGAGTATGCAGTTATCATCCCTGTGGTGGCTGGGCTGCTGCTGCTGCTATTTATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005066_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0175811=SBF=PU(37.7=96.7),PF085107=PIG-P=PU(34.2=90.0),PF072977=DPM2=PU(33.8=90.0)
C2:
PF0175811=SBF=FE(44.2=100),PF085107=PIG-P=FE(43.0=100),PF072977=DPM2=FE(42.5=100),PF046898=S1FA=PU(50.0=54.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGAAGGGCTCTCGGTGG
R:
CTATAAATAGCAGCAGCAGCAG
Band lengths:
132-222
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]