BtaEX6046409 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000038139 | CERCAM
Description
Bos taurus cerebral endothelial cell adhesion molecule (CERCAM), mRNA. [Source:RefSeq mRNA;Acc:NM_001102035]
Coordinates
chr11:99025341-99028067:+
Coord C1 exon
chr11:99025341-99025447
Coord A exon
chr11:99026520-99026652
Coord C2 exon
chr11:99027940-99028067
Length
133 bp
Sequences
Splice sites
3' ss Seq
TGTGACACCGTCTCCCTCAGGAT
3' ss Score
8.26
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
Exon sequences
Seq C1 exon
GTGTTTGTCATCAGCCTGGCCCGCCGGCCCGACCGCCGAGAGCGCATGCTGACTTCACTCTGGGAGATGGAGATCTCTGGGCGGGTGGTGGACGCTGTGGATGGCCG
Seq A exon
GATGCTCAATAGCAGTGTCATGAGGACCCTCGGCGTGGACCTGCTTCCCGGCTACCAGGACCCCTACTCGGGCCGCACGCTGACCAAGGGCGAGGTGGGCTGCTTCCTCAGCCACTACTCCATCTGGGAGGAG
Seq C2 exon
GTCGTCACCCGGGGCCTGGCCCAGGTCGTGGTATTTGAGGACGATGTACGCTTTGAGAGCAATTTCAAGGGGCGGCTGGAGCAGCTGATGGAGGAGGTGGAGGCGGAGAAACTTCCTTGGGACTTGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000038139-'9-13,'9-12,12-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0175512=Glyco_transf_25=FE(18.9=100)
A:
PF0175512=Glyco_transf_25=FE(23.8=100)
C2:
PF0175512=Glyco_transf_25=FE(22.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTTTGTCATCAGCCTGGCC
R:
TCAAGTCCCAAGGAAGTTTCTCC
Band lengths:
234-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]