DreEX6087253 @ danRer10
Exon Skipping
Gene
ENSDARG00000079049 | cercam
Description
cerebral endothelial cell adhesion molecule [Source:ZFIN;Acc:ZDB-GENE-030131-9787]
Coordinates
chr10:10406097-10408679:+
Coord C1 exon
chr10:10406097-10406203
Coord A exon
chr10:10406317-10406449
Coord C2 exon
chr10:10408552-10408679
Length
133 bp
Sequences
Splice sites
3' ss Seq
GATTTTGTGTGTGCACGCAGAGC
3' ss Score
7.71
5' ss Seq
GAGGTCAGT
5' ss Score
7.7
Exon sequences
Seq C1 exon
ATTTACTTGATAAACCTGCGCAGACGTCAAGACCGCCGGGACAGGATGTTATGGTCTCTGTATGAGCTAGAGATTGATGCTAAAGTTGTGGATGCTATAGATGGAGC
Seq A exon
AGCTCTGAACAGCAGCGATATTAAGATTCTAGGTGTGGATCTTTTACCTGGTTACTACGATCCTTTCTCTGGACGCACACTGACCAAAGGAGAGGTGGGCTGCTTCCTGAGCCACTACTATATCTGGAAAGAG
Seq C2 exon
ATGGTAGACATGCAGCTTGACAAGGCGCTGATCTTTGAGGACGATGTACGTTTTCAAGCCAATTTTAAACGGCGCATGATGCGGCTGATGGAGGAGGTGGAGCAGGTGGAGCTGGACTGGGACATCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079049-'10-11,'10-10,12-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0175512=Glyco_transf_25=FE(18.9=100)
A:
PF0175512=Glyco_transf_25=FE(23.8=100)
C2:
PF0175512=Glyco_transf_25=FE(22.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTACTTGATAAACCTGCGCAGAC
R:
ATGATGTCCCAGTCCAGCTCC
Band lengths:
234-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]