HsaEX0014880 @ hg19
Exon Skipping
Gene
ENSG00000167123 | CERCAM
Description
cerebral endothelial cell adhesion molecule [Source:HGNC Symbol;Acc:23723]
Coordinates
chr9:131191209-131196508:+
Coord C1 exon
chr9:131191209-131191315
Coord A exon
chr9:131193450-131193582
Coord C2 exon
chr9:131196381-131196508
Length
133 bp
Sequences
Splice sites
3' ss Seq
GCCACACCTGTGTCCCTCAGGAT
3' ss Score
7.48
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
Exon sequences
Seq C1 exon
GTCTTTGTCATCAGCCTGGCTCGCAGGCCTGACCGTCGGGAACGCATGCTCGCCTCGCTCTGGGAGATGGAGATCTCTGGGAGGGTGGTGGACGCTGTGGATGGCTG
Seq A exon
GATGCTCAACAGCAGTGCCATCAGGAACCTCGGCGTAGACCTGCTCCCGGGCTACCAGGACCCTTACTCGGGCCGCACTCTGACCAAGGGCGAGGTGGGCTGCTTCCTCAGCCATTACTCCATCTGGGAAGAG
Seq C2 exon
GTGGTTGCCAGGGGCCTGGCCCGGGTCCTGGTGTTTGAGGATGACGTGCGCTTTGAGAGCAACTTCAGGGGGCGGCTGGAGCGGCTGATGGAGGATGTGGAGGCAGAGAAACTGTCTTGGGACCTGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167123_MULTIEX1-1/3=C1-2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0175512=Glyco_transf_25=FE(18.9=100)
A:
PF0175512=Glyco_transf_25=FE(23.8=100)
C2:
PF0175512=Glyco_transf_25=FE(22.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTTTGTCATCAGCCTGGCT
R:
TCAGGTCCCAAGACAGTTTCTCT
Band lengths:
234-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)