RnoEX0020285 @ rn6
Exon Skipping
Gene
ENSRNOG00000026604 | Cercam
Description
cerebral endothelial cell adhesion molecule [Source:RGD Symbol;Acc:1304778]
Coordinates
chr3:8438726-8442507:+
Coord C1 exon
chr3:8438726-8438832
Coord A exon
chr3:8440090-8440222
Coord C2 exon
chr3:8442380-8442507
Length
133 bp
Sequences
Splice sites
3' ss Seq
TGTATGCTTGTGTCTCATAGGAC
3' ss Score
8.5
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
Exon sequences
Seq C1 exon
GTCTTTGTCATCAGCCTGGCCCGCAGACCCCAGCGCCGGGCTCGAATGCTGAGCTCTCTCTGGGAGATGGAGATCTCTGCCCGGGTGGTAGATGCTGTGGATGGCAG
Seq A exon
GACACTCAACAGCAGTATCCTCAAGCACCTTGGTGTGGACCTGCTCCCTGGCTACCAGGACCCCTACTCAGGCCGCACCCTGACCAAGGGTGAGGTGGGCTGCTTCCTCAGCCACTACTCCATCTGGGAAGAG
Seq C2 exon
GTGGTTGCCAAGGGCCTGGCCCGGGTGGTGGTGTTCGAGGATGATGTGCGCTTTGAGGACAACTTCCGGAAGCGTCTGGAACGGCTGATGGAGGATGTGCTGACTCAGAAGCTGTCATGGGACTTGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026604_MULTIEX1-7/7=6-C2
Average complexity
S*
Mappability confidence:
86%=86=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0175512=Glyco_transf_25=FE(18.9=100)
A:
PF0175512=Glyco_transf_25=FE(23.8=100)
C2:
PF0175512=Glyco_transf_25=FE(22.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTTTGTCATCAGCCTGGCC
R:
TCAAGTCCCATGACAGCTTCTG
Band lengths:
234-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]