BtaEX6046545 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000038831 | PHYHD1
Description
phytanoyl-CoA dioxygenase domain containing 1 [Source:HGNC Symbol;Acc:HGNC:23396]
Coordinates
chr11:99456482-99458026:+
Coord C1 exon
chr11:99456482-99456610
Coord A exon
chr11:99456940-99457056
Coord C2 exon
chr11:99457900-99458026
Length
117 bp
Sequences
Splice sites
3' ss Seq
GGCCCCACTTTGGCCTGCAGGTG
3' ss Score
7.58
5' ss Seq
GAGGTAGGG
5' ss Score
7.81
Exon sequences
Seq C1 exon
TCGCCCCTCACCAGGACGCCTCCTTCCTGTACACGGAGCCCCTGGGCCGGGTGCTGGGCCTGTGGATTGCCCTGGAAGACGCCATGCTGGAGAACGGCTGCCTCTGGTTCATCCCTGGGTCCCACACAG
Seq A exon
GTGGAGTGTCAAGAAGGATGGTCCGGACCCCTGCTGGCTCAGTGCCTGGCACCAGCTTCCTCGGGTCGGAGCCAATCCGGGATAACAGCCTCTTTGTGCCCACACCAGTGCTGAGAG
Seq C2 exon
GGGCCCTCGTCCTGATCCACGGAGAAGTGGTTCACAAGAGTGAGCAGAACCTTTCTGACCGCTCGCGCCAGGCCTACACTTTCCACCTCATGGAGGCTGCTGGCACCATCTGGAGCCCAGATAACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000038831-'18-20,'18-19,20-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.150 C2=0.023
Domain overlap (PFAM):
C1:
PF057218=PhyH=FE(17.3=100)
A:
PF057218=PhyH=FE(15.7=100)
C2:
PF057218=PhyH=PD(9.7=55.8)
Main Skipping Isoform:
ENSBTAT00000055396fB5211
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGACGCCTCCTTCCTGTA
R:
GCTCCAGATGGTGCCAGC
Band lengths:
234-351
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]