GgaEX1043554 @ galGal4
Exon Skipping
Gene
ENSGALG00000004565 | PHYHD1
Description
phytanoyl-CoA dioxygenase domain containing 1 [Source:HGNC Symbol;Acc:HGNC:23396]
Coordinates
chr17:5397652-5398818:+
Coord C1 exon
chr17:5397652-5397780
Coord A exon
chr17:5398460-5398576
Coord C2 exon
chr17:5398692-5398818
Length
117 bp
Sequences
Splice sites
3' ss Seq
CTTACTGTGTGGATGTGCAGGTG
3' ss Score
6
5' ss Seq
AAGGTAGAA
5' ss Score
6.33
Exon sequences
Seq C1 exon
TGACACCACACCAGGACGCCACGTTCCTGCACACGGAGCCCCTGGGCCGGGTCCTGGGCTTCTGGATTGCACTGGAGGACGCCACGCAGGAGAACGGCTGCCTGTGGTTCATTCCCGGCTCCCACACCA
Seq A exon
GTGGGATCACCCGCAGAATGGTGCGTGCAGCCCAGGGTGCCTCGACGTGCGTGGAGTTTGTAGGGTCAGAGCCAGCCTACGATGACAGCAAGTTCATACCTGTGCCCATAAGCAAAG
Seq C2 exon
GTGGGCTCATTGTCATCCACGGAGAGGTCGTCCATAAGAGCGCAATGAACAGCTCGGCGTTCTCTCGCCACGTGTACACCTTCCACGTGATGGAGGCCGAAGGCACCAACTGGAGCAAGGAGAACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004565-'12-20,'12-17,13-20
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.045 A=0.025 C2=0.047
Domain overlap (PFAM):
C1:
PF057218=PhyH=FE(17.3=100)
A:
PF057218=PhyH=FE(15.7=100)
C2:
PF057218=PhyH=PD(9.7=55.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCAGGACGCCACGTTC
R:
GTTCTCCTTGCTCCAGTTGGT
Band lengths:
246-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]