MmuEX7033479 @ mm10
Exon Skipping
Gene
ENSMUSG00000079484 | Phyhd1
Description
phytanoyl-CoA dioxygenase domain containing 1 [Source:MGI Symbol;Acc:MGI:3612860]
Coordinates
chr2:30279955-30281136:+
Coord C1 exon
chr2:30279955-30280083
Coord A exon
chr2:30280171-30280287
Coord C2 exon
chr2:30281010-30281136
Length
117 bp
Sequences
Splice sites
3' ss Seq
GGCTCCATGTTGGTCCACAGGTG
3' ss Score
8.47
5' ss Seq
GAGGTAGGT
5' ss Score
9.65
Exon sequences
Seq C1 exon
TCTCCCCTCACCAGGATGCTACCTTCCTCTACACGGAGCCCCTAGGCCGAGTGTTGGGCCTGTGGATTGCGATGGAGGATGCCATGCTGGAGAACGGTTGCCTCTGGTTCATCCCTGGCTCCCATACCC
Seq A exon
GTGGGGTGTCAAGAAGGATGATTCGAGCCCCTTCAGACTCTGGGCCTGGCACCAGCTTCCTCGGGTCAGATCCAGCCTGGGCTAGCAACCTCTTTGTGCCTTTGCCAGTGAGGAGAG
Seq C2 exon
GGGGTCTGGTTCTGATCCATGGAGAAGTGGTGCATAAGAGTGAGCAGAACCATTCCGACCACTCCCGCCAGGCCTACACTGTCCACCTCATGGAGGCTGCCGGCACTGTCTGGAGCCCAGGGAATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000079484-'14-21,'14-20,21-21=AN
Average complexity
A_C3
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.036 A=0.290 C2=0.214
Domain overlap (PFAM):
C1:
PF057218=PhyH=PD(11.1=31.2)
A:
PF057218=PhyH=FE(15.7=100)
C2:
PF057218=PhyH=PD(10.6=55.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTCACCAGGATGCTACCTT
R:
TGGGCTCCAGACAGTGCC
Band lengths:
244-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types