DreEX0055284 @ danRer10
Exon Skipping
Gene
ENSDARG00000029905 | phyhd1
Description
phytanoyl-CoA dioxygenase domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-041114-159]
Coordinates
chr21:4353529-4357521:+
Coord C1 exon
chr21:4353529-4353657
Coord A exon
chr21:4353895-4354011
Coord C2 exon
chr21:4357395-4357521
Length
117 bp
Sequences
Splice sites
3' ss Seq
TGGGGTTTTTTTTGTGAAAGATG
3' ss Score
3.21
5' ss Seq
AAGGTGAAT
5' ss Score
6.38
Exon sequences
Seq C1 exon
TGACTCCTCACCAGGACGCCACTTTCCTGTACACACAGCCTCTGGGGCGAGTCATGGGCGTCTGGGTTGCGCTGGAGGACGCCATGCAGGAGAACGGCTGTCTGTGGTTCATCCCAGGATCACACAACG
Seq A exon
ATGGTATAACCAGGCGAATGGTGCGGACACCTAAAGGCACATTTCCTCTGACTGATTTCATTGGCCGAGAAAAGGATTATGACGACAAGCTGTTTGTTCCTGCTCCTGTTAAAAAAG
Seq C2 exon
GTGGAGCAGTTCTGATTCACGGTGAAGTGGTCCACCGCAGTGCCGCAAACACCTCTGACGCCTCACGCCACGTTTACACCTTCCACATTATGGAGTCTGAAAACACCGTCTGGAGCCCTGAGAACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000029905_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.025 C2=0.000
Domain overlap (PFAM):
C1:
PF057218=PhyH=PD(25.3=90.6)
A:
PF057218=PhyH=FE(15.7=100)
C2:
PF057218=PhyH=PD(11.3=55.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGACGCCACTTTCCTGTAC
R:
AGTTCTCAGGGCTCCAGACG
Band lengths:
244-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]