BtaEX6046547 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000038831 | PHYHD1
Description
phytanoyl-CoA dioxygenase domain containing 1 [Source:HGNC Symbol;Acc:HGNC:23396]
Coordinates
chr11:99454196-99455304:+
Coord C1 exon
chr11:99454196-99454251
Coord A exon
chr11:99454337-99454399
Coord C2 exon
chr11:99455283-99455304
Length
63 bp
Sequences
Splice sites
3' ss Seq
TGACCTCTGCCCCCTTCCAGGCT
3' ss Score
10.36
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
CCCTGCATGCCCTTGACCCCATCTTCAGGTGTGTCACACACTCCCACAAGGTGCAG
Seq A exon
GCTTTGGCCAGAAGTCTGGGCCTCCAGATGCCTGTGGTGGTGCAGAGCATGTATATCTTTAAG
Seq C2 exon
CAACCTCACTTCGGAGGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000038831-'14-14,'14-11,15-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF057218=PhyH=FE(13.0=100)
A:
PF057218=PhyH=FE(10.5=100)
C2:
PF057218=PhyH=FE(2.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCATGCCCTTGACCCCAT
R:
CTTCACCTCCGAAGTGAGG
Band lengths:
76-139
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]