MmuEX7033482 @ mm10
Exon Skipping
Gene
ENSMUSG00000079484 | Phyhd1
Description
phytanoyl-CoA dioxygenase domain containing 1 [Source:MGI Symbol;Acc:MGI:3612860]
Coordinates
chr2:30269689-30280287:+
Coord C1 exon
chr2:30269689-30269847
Coord A exon
chr2:30277148-30277210
Coord C2 exon
chr2:30280171-30280287
Length
63 bp
Sequences
Splice sites
3' ss Seq
ATGTGGCTTTCATCTTCTAGGCT
3' ss Score
9.96
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
TTCCAGGAGGACGGGTTTCTGCTGTTGGAAGGATTCTTCACAGCGGATGAGTGTGTGGCCATGCAGCAGAGGATCGGTGAGATTGTAGCTGAGATGGATGTCCCTCTGCACTGCCGGACAGAATTTTCCACCCAGGAAGATGAGCAACTTCAAACCCAG
Seq A exon
GCTTTGGTTAGAAGTCTGGGCCTCCAGATGCCAGTGGTGGTGCAGAGCATGTATATCTTTAAG
Seq C2 exon
GTGGGGTGTCAAGAAGGATGATTCGAGCCCCTTCAGACTCTGGGCCTGGCACCAGCTTCCTCGGGTCAGATCCAGCCTGGGCTAGCAACCTCTTTGTGCCTTTGCCAGTGAGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000079484-'12-15,'12-14,13-15=AN
Average complexity
A_C3
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.080 A=0.000 C2=0.290
Domain overlap (PFAM):
C1:
PF057218=PhyH=PU(21.0=98.1)
A:
PF057218=PhyH=FE(14.4=100)
C2:
PF057218=PhyH=PD(10.2=80.8)
Other Inclusion Isoforms:
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACCCAGGAAGATGAGCAAC
R:
TGGCAAAGGCACAAAGAGGTT
Band lengths:
139-202
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types