HsaEX0047262 @ hg19
Exon Skipping
Gene
ENSG00000175287 | PHYHD1
Description
phytanoyl-CoA dioxygenase domain containing 1 [Source:HGNC Symbol;Acc:23396]
Coordinates
chr9:131698727-131700057:+
Coord C1 exon
chr9:131698727-131698782
Coord A exon
chr9:131698862-131698924
Coord C2 exon
chr9:131700036-131700057
Length
63 bp
Sequences
Splice sites
3' ss Seq
TGACCTTTGCCCCCCTCCAGACC
3' ss Score
10.09
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
CTCTGCACGCCCACGACCCCGTCTTCAAGAGCATCACACACTCCTTCAAGGTGCAG
Seq A exon
ACCTTGGCCAGAAGTCTGGGCCTCCAGATGCCCGTGGTGGTGCAGAGCATGTACATCTTTAAG
Seq C2 exon
CAACCTCACTTTGGCGGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000175287-'9-18,'9-16,10-18
Average complexity
C1
Mappability confidence:
89%=75=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.125
Domain overlap (PFAM):
C1:
PF057218=PhyH=FE(12.7=100)
A:
PF057218=PhyH=FE(14.1=100)
C2:
PF057218=PhyH=PD(7.5=68.8)
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCGTCTTCAAGAGCATCAC
R:
CTTCACCGCCAAAGTGAGGTT
Band lengths:
62-125
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)