RnoEX0065618 @ rn6
Exon Skipping
Gene
ENSRNOG00000016794 | Phyhd1
Description
phytanoyl-CoA dioxygenase domain containing 1 [Source:RGD Symbol;Acc:1310377]
Coordinates
chr3:8841290-8841902:+
Coord C1 exon
chr3:8841290-8841345
Coord A exon
chr3:8841432-8841494
Coord C2 exon
chr3:8841881-8841902
Length
63 bp
Sequences
Splice sites
3' ss Seq
TGTGTGGTTTCATCTTCTAGGCT
3' ss Score
9.93
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
CTCTGCATGCCCATGACCCTGTCTTCAGGAGCATCACACACTCTCCCAAGGTGCAG
Seq A exon
GCTTTGGTCAGAAGTCTGGGCCTCCAGATACCAGTGGTGGTACAGAGCATGTATATCTTTAAG
Seq C2 exon
CAACCTCACTTTGGCGGCGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016794-'19-12,'19-10,20-12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.062
Domain overlap (PFAM):
C1:
PF057218=PhyH=FE(6.9=100),PF063756=BLVR=PU(15.9=52.6)
A:
PF057218=PhyH=FE(7.6=100),PF063756=BLVR=FE(31.7=100)
C2:
PF057218=PhyH=FE(2.7=100),PF063756=BLVR=FE(11.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCATGCCCATGACCCTG
R:
CTTCGCCGCCAAAGTGAGG
Band lengths:
76-139
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]