MmuEX7033484 @ mm10
Exon Skipping
Gene
ENSMUSG00000079484 | Phyhd1
Description
phytanoyl-CoA dioxygenase domain containing 1 [Source:MGI Symbol;Acc:MGI:3612860]
Coordinates
chr2:30269689-30279526:+
Coord C1 exon
chr2:30269689-30269847
Coord A exon
chr2:30274676-30274723
Coord C2 exon
chr2:30279395-30279526
Length
48 bp
Sequences
Splice sites
3' ss Seq
GTTTGTTTTTTATACCACAGGAA
3' ss Score
8.52
5' ss Seq
ATGGTAAGC
5' ss Score
9.26
Exon sequences
Seq C1 exon
TTCCAGGAGGACGGGTTTCTGCTGTTGGAAGGATTCTTCACAGCGGATGAGTGTGTGGCCATGCAGCAGAGGATCGGTGAGATTGTAGCTGAGATGGATGTCCCTCTGCACTGCCGGACAGAATTTTCCACCCAGGAAGATGAGCAACTTCAAACCCAG
Seq A exon
GAAATTTCTTGGTCCCTCCTGAGAAATCTATCAACAAAATTGGCCATG
Seq C2 exon
AGGTCCTGAGTTCAATTCCCAGCAACTACATGGTGGCTCACAACCATCTGTAATGGGATCCGATGCCCTCTCTGGTATGTCTGAAGACAGCTACAGTGTACTTATATAAATAAAATATTTGTTAAGATTATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000079484-'3-13,'3-12,11-13=AN
Average complexity
A_C3
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.080 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
PF057218=PhyH=PU(21.0=98.1)
A:
PF057218=PhyH=FE(11.5=100)
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATGGATGTCCCTCTGCACT
R:
AGGGCATCGGATCCCATTACA
Band lengths:
137-185
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types