HsaEX0047265 @ hg19
Exon Skipping
Gene
ENSG00000175287 | PHYHD1
Description
phytanoyl-CoA dioxygenase domain containing 1 [Source:HGNC Symbol;Acc:23396]
Coordinates
chr9:131696061-131698782:+
Coord C1 exon
chr9:131696061-131696136
Coord A exon
chr9:131696290-131696337
Coord C2 exon
chr9:131698727-131698782
Length
48 bp
Sequences
Splice sites
3' ss Seq
ATCTGTTCTTTGTGCCACAGGAA
3' ss Score
9.52
5' ss Seq
ACGGTGAGC
5' ss Score
9.44
Exon sequences
Seq C1 exon
GGCAGCACAGACTATTTCTTGAGCAGTGGTGACAAGATTCGATTCTTCTTTGAGAAAGGCGTTTTTGATGAGAAAG
Seq A exon
GAAATTTCCTGGTCCCTCCGGAGAAATCCATCAACAAAATTGGCCACG
Seq C2 exon
CTCTGCACGCCCACGACCCCGTCTTCAAGAGCATCACACACTCCTTCAAGGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000175287_MULTIEX1-3/8=2-4
Average complexity
S
Mappability confidence:
86%=100=86%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.007 A=0.014 C2=0.000
Domain overlap (PFAM):
C1:
PF057218=PhyH=FE(17.6=100)
A:
PF057218=PhyH=FE(11.3=100)
C2:
PF057218=PhyH=FE(12.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAGCACAGACTATTTCTTGA
R:
CTGCACCTTGAAGGAGTGTGT
Band lengths:
132-180
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)