DreEX0055288 @ danRer10
Exon Skipping
Gene
ENSDARG00000029905 | phyhd1
Description
phytanoyl-CoA dioxygenase domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-041114-159]
Coordinates
chr21:4350333-4353657:+
Coord C1 exon
chr21:4350333-4350408
Coord A exon
chr21:4350486-4350533
Coord C2 exon
chr21:4353529-4353657
Length
48 bp
Sequences
Splice sites
3' ss Seq
TGTGACGCTTGTGTTTTCAGGAG
3' ss Score
9.4
5' ss Seq
ATGGTGGGT
5' ss Score
6.18
Exon sequences
Seq C1 exon
GGAAATGCAGACTATTTCATCACCAGTGGAGATAAGATCCGTTTCTTCTTTGAGAAAGGAGTGTTTGATGATAAAG
Seq A exon
GAGAGTTCGTCGTGCCGAAAGAACAATCCCTGAATAAAATCGGCCATG
Seq C2 exon
TGACTCCTCACCAGGACGCCACTTTCCTGTACACACAGCCTCTGGGGCGAGTCATGGGCGTCTGGGTTGCGCTGGAGGACGCCATGCAGGAGAACGGCTGTCTGTGGTTCATCCCAGGATCACACAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000029905_MULTIEX1-4/7=3-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF057218=PhyH=FE(10.1=100)
A:
PF057218=PhyH=FE(6.5=100)
C2:
PF057218=PhyH=PD(25.3=90.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGTTTCTTCTTTGAGAAAGGAGTG
R:
GAACCACAGACAGCCGTTCTC
Band lengths:
148-196
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]