RnoEX0065624 @ rn6
Exon Skipping
Gene
ENSRNOG00000016794 | Phyhd1
Description
phytanoyl-CoA dioxygenase domain containing 1 [Source:RGD Symbol;Acc:1310377]
Coordinates
chr3:8839164-8841345:+
Coord C1 exon
chr3:8839164-8839239
Coord A exon
chr3:8839365-8839412
Coord C2 exon
chr3:8841290-8841345
Length
48 bp
Sequences
Splice sites
3' ss Seq
GTCTGTTTTCTGTACCACAGGAA
3' ss Score
9.39
5' ss Seq
ATGGTGAGC
5' ss Score
8.27
Exon sequences
Seq C1 exon
GGCAACACGGACTACTTCTTGAGCAGTGGTGACAAGATCAGATTCTTCTTTGAAAAAGGCGTTTTTGATGAGAAAG
Seq A exon
GAAATTTCTTGGTTCCTCCAGAGAAATCTATCAACAAAATTGGCCATG
Seq C2 exon
CTCTGCATGCCCATGACCCTGTCTTCAGGAGCATCACACACTCTCCCAAGGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016794_MULTIEX1-2/6=1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.064 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF057218=PhyH=FE(10.1=100)
A:
PF057218=PhyH=FE(16.5=100)
C2:
PF057218=PhyH=FE(6.9=100),PF063756=BLVR=PU(15.9=52.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAACACGGACTACTTCTTGA
R:
CTGCACCTTGGGAGAGTGTGT
Band lengths:
132-180
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]