GgaEX1043555 @ galGal4
Exon Skipping
Gene
ENSGALG00000004565 | PHYHD1
Description
phytanoyl-CoA dioxygenase domain containing 1 [Source:HGNC Symbol;Acc:HGNC:23396]
Coordinates
chr17:5395393-5397030:+
Coord C1 exon
chr17:5395393-5395468
Coord A exon
chr17:5395576-5395623
Coord C2 exon
chr17:5396975-5397030
Length
48 bp
Sequences
Splice sites
3' ss Seq
ATTCTGGTTTTGTCTCATAGGCA
3' ss Score
8.44
5' ss Seq
ATGGTACGT
5' ss Score
9.89
Exon sequences
Seq C1 exon
GGTAGCTCGGATTATTTCCTCACCAGTGGAGACAAGATCAGGTTCTTCTTTGAGAAGGGTGTTCTGGATGAGAGAG
Seq A exon
GCAACTTCCTAATTGCAAAGGAGAAATCTGTCAGTAAGATTGGCCATG
Seq C2 exon
CCTTGCACGCTCACGATCCTGTCTTCAAGCAGATCACTCACTCCTCCAAGGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004565-'3-9,'3-5,4-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.019 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF057218=PhyH=FE(10.1=100)
A:
PF057218=PhyH=FE(16.7=100)
C2:
PF057218=PhyH=FE(7.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTAGCTCGGATTATTTCCTCACC
R:
CTGCACCTTGGAGGAGTGAGT
Band lengths:
132-180
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]