BtaEX6046549 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000038831 | PHYHD1
Description
phytanoyl-CoA dioxygenase domain containing 1 [Source:HGNC Symbol;Acc:HGNC:23396]
Coordinates
chr11:99453664-99454251:+
Coord C1 exon
chr11:99453664-99453739
Coord A exon
chr11:99453876-99453923
Coord C2 exon
chr11:99454196-99454251
Length
48 bp
Sequences
Splice sites
3' ss Seq
ATCTATTCTTTGTGCCACAGGAA
3' ss Score
8.46
5' ss Seq
ATGGTAAGC
5' ss Score
9.26
Exon sequences
Seq C1 exon
GGCAGCACAGACTATTTCTTAAGCAGCGGTGACAAGATTCGATTCTTCTTTGAGAAAGGCGTCTTTGACAAACAAG
Seq A exon
GAAATTTCCTGGTCCCACCGGAGAAATCCATCAACAAAATTGGCCATG
Seq C2 exon
CCCTGCATGCCCTTGACCCCATCTTCAGGTGTGTCACACACTCCCACAAGGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000038831-'10-10,'10-8,11-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF057218=PhyH=FE(10.1=100)
A:
PF057218=PhyH=FE(11.6=100)
C2:
PF057218=PhyH=FE(13.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAGCACAGACTATTTCTTAAGC
R:
CTGCACCTTGTGGGAGTGTG
Band lengths:
132-180
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]