MmuEX0034928 @ mm10
Exon Skipping
Gene
ENSMUSG00000079484 | Phyhd1
Description
phytanoyl-CoA dioxygenase domain containing 1 [Source:MGI Symbol;Acc:MGI:3612860]
Coordinates
chr2:30269689-30274723:+
Coord C1 exon
chr2:30269689-30269847
Coord A exon
chr2:30274470-30274545
Coord C2 exon
chr2:30274676-30274723
Length
76 bp
Sequences
Splice sites
3' ss Seq
CTCCTATGCCCCCTCCATAGGGC
3' ss Score
9.54
5' ss Seq
AAGGTTTGG
5' ss Score
5.28
Exon sequences
Seq C1 exon
TTCCAGGAGGACGGGTTTCTGCTGTTGGAAGGATTCTTCACAGCGGATGAGTGTGTGGCCATGCAGCAGAGGATCGGTGAGATTGTAGCTGAGATGGATGTCCCTCTGCACTGCCGGACAGAATTTTCCACCCAGGAAGATGAGCAACTTCAAACCCAG
Seq A exon
GGCAAGACAGACTACTTCTTGAGCAGCGGTGACAAGATCCGATTCTTCTTTGAAAAAGGCGTTTTTGATGAGAAAG
Seq C2 exon
GAAATTTCTTGGTCCCTCCTGAGAAATCTATCAACAAAATTGGCCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000079484-'3-12,'3-10,9-12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.080 A=0.047 C2=0.000
Domain overlap (PFAM):
C1:
PF057218=PhyH=PU(21.0=98.1)
A:
PF057218=PhyH=FE(10.1=100)
C2:
PF057218=PhyH=FE(11.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACGGGTTTCTGCTGTTGGAA
R:
AGATTTCTCAGGAGGGACCAAGA
Band lengths:
179-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types