RnoEX0065623 @ rn6
Exon Skipping
Gene
ENSRNOG00000016794 | Phyhd1
Description
phytanoyl-CoA dioxygenase domain containing 1 [Source:RGD Symbol;Acc:1310377]
Coordinates
chr3:8835805-8841902:+
Coord C1 exon
chr3:8835805-8835963
Coord A exon
chr3:8839164-8839239
Coord C2 exon
chr3:8841881-8841902
Length
76 bp
Sequences
Splice sites
3' ss Seq
TCCTATGCTCCCTTCCATAGGGC
3' ss Score
11.94
5' ss Seq
AAGGTTTGG
5' ss Score
5.28
Exon sequences
Seq C1 exon
TTCCAGGAGGACGGGTTTCTGCTGTTGGAAGGATTCTTCACAGCAGACGAGTGTGTGGTCATGCAGCAGAGGATTGGTGAGATTGTGGCTGAGATGGACGTCCCTCTGCACTGCCGGACAGAATTTTCCACCCAGGAAGATGAGCAGCTTCAAACTCAG
Seq A exon
GGCAACACGGACTACTTCTTGAGCAGTGGTGACAAGATCAGATTCTTCTTTGAAAAAGGCGTTTTTGATGAGAAAG
Seq C2 exon
CAACCTCACTTTGGCGGCGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016794_MULTIEX1-1/6=C1-5
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.088 A=0.064 C2=0.062
Domain overlap (PFAM):
C1:
PF057218=PhyH=PU(21.0=98.1)
A:
PF057218=PhyH=FE(10.1=100)
C2:
PF057218=PhyH=FE(2.7=100),PF063756=BLVR=FE(11.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACGGGTTTCTGCTGTTGGAA
R:
CTTCGCCGCCAAAGTGAGG
Band lengths:
172-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]