BtaEX6046550 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000038831 | PHYHD1
Description
phytanoyl-CoA dioxygenase domain containing 1 [Source:HGNC Symbol;Acc:HGNC:23396]
Coordinates
chr11:99448981-99453923:+
Coord C1 exon
chr11:99448981-99449139
Coord A exon
chr11:99453664-99453739
Coord C2 exon
chr11:99453876-99453923
Length
76 bp
Sequences
Splice sites
3' ss Seq
CTGATGTCCCCTCTCCACAGGGC
3' ss Score
12.37
5' ss Seq
AAGGTTTGG
5' ss Score
5.28
Exon sequences
Seq C1 exon
TTTCAGGAGGATGGATTCCTGGTGCTGGAAGGGTTCTTATCTGCAGACGAGTGTGAGGCCATGCAACGGAGGATTGATGAGATCGTGGCCAAGATGGATGTCCCTCTCCACTGTCGCACGGAATTTTCTACCCAGGAGGAGGAGCAGCTGCGAGCCCAG
Seq A exon
GGCAGCACAGACTATTTCTTAAGCAGCGGTGACAAGATTCGATTCTTCTTTGAGAAAGGCGTCTTTGACAAACAAG
Seq C2 exon
GAAATTTCCTGGTCCCACCGGAGAAATCCATCAACAAAATTGGCCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000038831-'9-8,'9-7,10-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.019 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF057218=PhyH=PU(21.0=98.1)
A:
PF057218=PhyH=FE(10.1=100)
C2:
PF057218=PhyH=FE(11.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTCCTGGTGCTGGAAGGGTT
R:
TGATGGATTTCTCCGGTGGGA
Band lengths:
178-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]