DreEX0055287 @ danRer10
Exon Skipping
Gene
ENSDARG00000029905 | phyhd1
Description
phytanoyl-CoA dioxygenase domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-041114-159]
Coordinates
chr21:4347309-4353657:+
Coord C1 exon
chr21:4347309-4347467
Coord A exon
chr21:4350333-4350408
Coord C2 exon
chr21:4353529-4353657
Length
76 bp
Sequences
Splice sites
3' ss Seq
TCATGTTTTGTGTTTTCCAGGGA
3' ss Score
10.77
5' ss Seq
AAGGTTTGG
5' ss Score
5.28
Exon sequences
Seq C1 exon
TTCCGGGACGAGGGCTATCTGGTGCTGGAAGGCCTTCTGTCTCCAGAGGAGTGCGATGCTTTACGGAGGCGCATGAGTGAGATTATCGAGAGCATGGACGTTCCTGAACACTGCAGGACACAGTTCTCCACCGACCATGACGAGCAGCTGAAAACGCAG
Seq A exon
GGAAATGCAGACTATTTCATCACCAGTGGAGATAAGATCCGTTTCTTCTTTGAGAAAGGAGTGTTTGATGATAAAG
Seq C2 exon
TGACTCCTCACCAGGACGCCACTTTCCTGTACACACAGCCTCTGGGGCGAGTCATGGGCGTCTGGGTTGCGCTGGAGGACGCCATGCAGGAGAACGGCTGTCTGTGGTTCATCCCAGGATCACACAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000029905_MULTIEX1-3/7=2-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.199 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF057218=PhyH=PU(21.0=98.1)
A:
PF057218=PhyH=FE(10.1=100)
C2:
PF057218=PhyH=PD(25.3=90.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGACGTTCCTGAACACTGC
R:
CTGGGATGAACCACAGACAGC
Band lengths:
183-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]