BtaEX6046571 @ bosTau6
Exon Skipping
Description
NA
Coordinates
chr11:99492600-99493685:+
Coord C1 exon
chr11:99492600-99492720
Coord A exon
chr11:99492832-99492898
Coord C2 exon
chr11:99493557-99493685
Length
67 bp
Sequences
Splice sites
3' ss Seq
ATGTCTTTTCTGGAGTCCAGGTT
3' ss Score
2.08
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
Exon sequences
Seq C1 exon
GGGCAGCTTGGTAGTACCCAGAGCCAAGGGCTGGTGCCTTGTGTCATGTTTGTGCTGAAGGAGATGCTGCCAAGTTACCACAAGTGGCGATACAACTCCCATGGTGTGAGAGAACAGATTG
Seq A exon
GTTGCCTGATCCTGGAGCTGATTCATTCAATACTGAACCTGTGCCATGAGACAGACCTGCATAGCAG
Seq C2 exon
TCACACCCCCAGCCTGCAGTCTCTCTGCATCTGCAGCCTGGCCTACACGGAAGCAGGACAGACAGTAATCAATATCATGGGCATCGGTGTGGACACCATCGACATGGTCATGGCTGCTCAGCCCCGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010613-'27-29,'27-28,28-29=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.023
Domain overlap (PFAM):
C1:
PF104874=Nup188=FE(4.4=100),PF118943=DUF3414=FE(8.0=100)
A:
PF104874=Nup188=FE(2.4=100),PF118943=DUF3414=FE(4.4=100)
C2:
PF104874=Nup188=FE(4.7=100),PF118943=DUF3414=FE(8.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTAGTACCCAGAGCCAAGG
R:
TGTCTGTCCTGCTTCCGTGTA
Band lengths:
177-244
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]