GgaEX1040854 @ galGal3
Exon Skipping
Gene
ENSGALG00000004548 | NUP188
Description
NA
Coordinates
chr17:5971566-5972543:+
Coord C1 exon
chr17:5971566-5971686
Coord A exon
chr17:5971913-5971979
Coord C2 exon
chr17:5972419-5972543
Length
67 bp
Sequences
Splice sites
3' ss Seq
CCATTTCGTCTGTGTTTCAGGAT
3' ss Score
10.26
5' ss Seq
TAGGTAAGA
5' ss Score
9.14
Exon sequences
Seq C1 exon
GGACAACTTGGTAGCACCCAGAGCCAAGGGCTTGTGCCCTGCATTGTGTTTGTCCTGAAGGAGATGTTACCAAATTACCACAAATGGCGTTACAACTCTCATGGAGTGAGGGAGAAAATTG
Seq A exon
GATGCCTCATTCTACAATTGATTCATGCAATACTGAATTTATGCCCTGAAATGGATCCTCGCAGTAG
Seq C2 exon
CAATGCCCCCAGCCTTCAGTCCTTGTGCATCTTCAGCCTGGCCAACACTGAAGCAGGGCAAGCTGTCATTAACATCATGGGAATCGGTGTTGACACTATTGACATGGTAATGGCCTCCCAGTCGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004548-'28-24,'28-23,29-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.023
Domain overlap (PFAM):
C1:
PF104874=Nup188=FE(4.4=100)
A:
PF104874=Nup188=FE(2.4=100)
C2:
PF104874=Nup188=FE(4.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACAACTTGGTAGCACCCAG
R:
GTGTTGGCCAGGCTGAAGATG
Band lengths:
169-236
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]