MmuEX6100241 @ mm10
Exon Skipping
Gene
ENSMUSG00000052533 | Nup188
Description
nucleoporin 188 [Source:MGI Symbol;Acc:MGI:2446190]
Coordinates
chr2:30325228-30326578:+
Coord C1 exon
chr2:30325228-30325348
Coord A exon
chr2:30325473-30325539
Coord C2 exon
chr2:30326450-30326578
Length
67 bp
Sequences
Splice sites
3' ss Seq
ATGTCTTTTTTGGAGTCTAGGTT
3' ss Score
3.35
5' ss Seq
CAGGTGATG
5' ss Score
5.99
Exon sequences
Seq C1 exon
GGGCAGCTTGGTAGTACCCAGAGCCAAGGCCTGGTGCCTTGTGTGATGTTCGTGTTGAAGGAGATGCTTCCCAGCTACCACAAATGGCGCTACAACTCTCATGGCGTGCGAGAGCTGATAG
Seq A exon
GTTGCCTAATTCTGGAGCTGATTCATGCAATACTGAACCTGTGCCAAGAGACAGAGCTGCATAGCAG
Seq C2 exon
CCACACACCCAGCCTGCCTTCCCTCTGCATCTGCAGCCTGGCTTATACCGAAGCTGGACAGACCGTCATTAGCATCATGGGAATTGGTGTAGACACCATAGACATGGTGATGGCTGCTCAGCCCCGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000052533-'32-40,'32-37,34-40
Average complexity
S
Mappability confidence:
100%=100=83%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.068
Domain overlap (PFAM):
C1:
PF104874=Nup188=FE(4.4=100)
A:
PF104874=Nup188=FE(2.4=100)
C2:
PF104874=Nup188=FE(4.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTAGTACCCAGAGCCAAGG
R:
GCTTCGGTATAAGCCAGGCTG
Band lengths:
167-234
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types