BtaEX6046689 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004204 | GPR107
Description
Bos taurus G protein-coupled receptor 107 (GPR107), mRNA. [Source:RefSeq mRNA;Acc:NM_001099164]
Coordinates
chr11:100443612-100444425:+
Coord C1 exon
chr11:100443612-100443734
Coord A exon
chr11:100444053-100444103
Coord C2 exon
chr11:100444346-100444425
Length
51 bp
Sequences
Splice sites
3' ss Seq
CCGTTTTCACCTCCTCTTAGATT
3' ss Score
9.36
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
Exon sequences
Seq C1 exon
GATGACGTGAGGCATAAGGTTCATCTGAACACCTTTGGATTCTTCAAGAATGGGTACATGAAGGTGAATGTCAGCAGCCTTTCAGTGAATGAACCTAAAGGAGCCACAGACAAGGACTTCACT
Seq A exon
ATTGGATTCAGCCTAGACCGAACAAAGAACGATGGCTTTTCTTCGTATCTG
Seq C2 exon
GATGAAGATGTGAATTACTGTATTTTAAAGAAGCAGTCTGCCTCTGTCACGCTTTTAATCCTAGACATCTCCAGAAGTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004204-'2-6,'2-5,4-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAAGAATGGGTACATGAAGGTGA
R:
AAAAGCGTGACAGAGGCAGAC
Band lengths:
136-187
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]