RnoEX6016393 @ rn6
Exon Skipping
Gene
ENSRNOG00000023589 | Gpr107
Description
G protein-coupled receptor 107 [Source:RGD Symbol;Acc:1305882]
Coordinates
chr3:10678419-10679867:-
Coord C1 exon
chr3:10679745-10679867
Coord A exon
chr3:10679089-10679139
Coord C2 exon
chr3:10678419-10678501
Length
51 bp
Sequences
Splice sites
3' ss Seq
TTCTTCTCTGTTGCCCTCAGATT
3' ss Score
11.22
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
GATGACGTGCGGCACAAAGTCCATCTCAACACCTTCGGCTTCTTCAAGGACGGGTACATGGTGGTCAACATCAGCAGCCTCTCTGTGAACGAGCCTGAGGGAGTCAAGGACAAAGACACTGAG
Seq A exon
ATTGGCTTCAGTCTTGATCGGACCAAGAATGATGGCTTTTCTTCTTACCTG
Seq C2 exon
GATGAAGATGTGAATTACTGTATTTTAAAAAAAAAGTCCATGTCTTCTGTCACTCTGCTCATCTTAGACATCTCCGGAAGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000023589-'3-3,'3-1,4-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.033 A=0.078 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACGGGTACATGGTGGTCAAC
R:
GCAGAGTGACAGAAGACATGGA
Band lengths:
133-184
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]