GgaEX7009772 @ galGal4
Exon Skipping
Gene
ENSGALG00000004052 | GPR107
Description
protein GPR107 precursor [Source:RefSeq peptide;Acc:NP_001025857]
Coordinates
chr17:5828668-5829644:+
Coord C1 exon
chr17:5828668-5828793
Coord A exon
chr17:5829282-5829332
Coord C2 exon
chr17:5829556-5829644
Length
51 bp
Sequences
Splice sites
3' ss Seq
TCTTCTTAATTGTCACATAGGTG
3' ss Score
7.42
5' ss Seq
CTGGTAAGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
GATGATGTGAGGCAGAAAGTGCACCTGAATACATTTGGCTTCTTCAAGAATGGTTTCATGAAAGTCAATGTGAGCAACCTTTCATTGAAGCCACCTGTGAATGCTGATGACAAGAGCAGCTCATCA
Seq A exon
GTGGGGTTCAGTCTGGATCGAACAAGGAATGATGGGTTCTCCACTTATCTG
Seq C2 exon
GATGAAGAAGTGGATTACTGTATTTTGAATAAGAAACCTGAGCAAGGTGTTTCTGTTGTAATCTTACTTCTGGACTTCAAAAATGATGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004052-'6-7,'6-5,7-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.024 A=0.059 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTTCATGAAAGTCAATGTGAGCA
R:
ACAACAGAAACACCTTGCTCAG
Band lengths:
134-185
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]