DreEX0035787 @ danRer10
Exon Skipping
Gene
ENSDARG00000096651 | gpr108
Description
G protein-coupled receptor 108 [Source:ZFIN;Acc:ZDB-GENE-121214-129]
Coordinates
chr1:58366260-58367010:+
Coord C1 exon
chr1:58366260-58366376
Coord A exon
chr1:58366796-58366846
Coord C2 exon
chr1:58366928-58367010
Length
51 bp
Sequences
Splice sites
3' ss Seq
GGTGTTGCTCTGTGTTGCAGGTG
3' ss Score
9.77
5' ss Seq
ACAGTAAGC
5' ss Score
5.94
Exon sequences
Seq C1 exon
AATGAGACGCGGTTTATTGTCCATTTAAACACCTTTGGTTATTTTGCTAACGGCTTTCTGGAAGTCCAGCTGCTTTCTCTGAACCTTCCCCTGGAAAACAGCGACTCTGGCGACAAA
Seq A exon
GTGGGCTTCAGTTTGACACGGACCCGAGTGAACGGACTCCTGTCCTACACA
Seq C2 exon
GCTGAGGAGGTGGAGGAGTGCAGACTGACCAAGACCAAGAGTGAAGATGAGCTCATACTCTTCATCGACACCAAGAACCTGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000096651-'3-2,'3-1,4-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGACGCGGTTTATTGTCCA
R:
CTTGGTCAGTCTGCACTCCTC
Band lengths:
148-199
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]