RnoEX0039589 @ rn6
Exon Skipping
Gene
ENSRNOG00000046128 | Gpr108
Description
G protein-coupled receptor 108 [Source:RGD Symbol;Acc:735149]
Coordinates
chr9:9705109-9710093:+
Coord C1 exon
chr9:9705109-9705228
Coord A exon
chr9:9707346-9707396
Coord C2 exon
chr9:9709879-9710093
Length
51 bp
Sequences
Splice sites
3' ss Seq
CTCTTTCTCTTTCCTGTCAGGTG
3' ss Score
12.18
5' ss Seq
TCGGTGAGT
5' ss Score
11.11
Exon sequences
Seq C1 exon
GGGGAGAAGCGAGCTGACATCCAACTGAACAGCTTTGGATTCTACACCAATGGTTCCCTGGAAGTAGAGCTGAGCTTACTGCGACTCAGCCTCCAGGAGACAGAAGACAAGTTTCCAAAG
Seq A exon
GTGGGATTCAGCTTGAGCCGAGTTCGGTCCGGCAGTGTTCGCTCCTACTCG
Seq C2 exon
TCATTCACCCATCTCCAAAAAAGATGTCTGCAGTCAAGGAAGATCAGGCAAAGCTTACAGTGCCCCAGGTTTCCGGGGATAAAGCTCTCCCAGCGGGACACAGGCACTCATCTGATGGCCAGCCACAAAGCCAGCCACCCACACGGGGGCCCAGTGGGAAGGAGAAGGATCTGGTTTTGGGACTGGGCCACCTCAATGACTCCTACAACTTCAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000046128_MULTIEX1-1/5=C1-4
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.806
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAGCTTACTGCGACTCAGC
R:
GCTTTATCCCCGGAAACCTGG
Band lengths:
136-187
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]