MmuEX6078751 @ mm10
Exon Skipping
Gene
ENSMUSG00000005823 | Gpr108
Description
G protein-coupled receptor 108 [Source:MGI Symbol;Acc:MGI:1925558]
Coordinates
chr17:57245029-57246883:-
Coord C1 exon
chr17:57246764-57246883
Coord A exon
chr17:57245295-57245345
Coord C2 exon
chr17:57245029-57245111
Length
51 bp
Sequences
Splice sites
3' ss Seq
TTCTCCTCTTTTTCCATCAGGTG
3' ss Score
11.27
5' ss Seq
TCGGTGAGT
5' ss Score
11.11
Exon sequences
Seq C1 exon
GGGGAGAAGCGAGCTGACATCCAACTGAACAGCTTCGGATTCTACACCAATGGTTCCCTGGAAGTAGAGCTGAGCTTACTGCGACTCAGCCTCCAGGAGACAGAAAAGAAGTTGCCAAAG
Seq A exon
GTGGGGTTCAGCTTGAGCAGAGTTCGGTCTGGCAGTGTCCGCTCCTACTCG
Seq C2 exon
AGACGGAACTCCCATGAATGCCCTCTGGATAGAAACAGCAGCAACTTCCTGGTCCTGTTCCTCATCAATATCAAGGACCTGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000005823-'4-3,'4-2,6-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.025 A=0.059 C2=0.250
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENSMUST00000005975fB10785
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCGAGCTGACATCCAACTG
R:
ATCCAGAGGGCATTCATGGGA
Band lengths:
144-195
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types