BtaEX0016138 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000017291 | GPR108
Description
Bos taurus G protein-coupled receptor 108 (GPR108), mRNA. [Source:RefSeq mRNA;Acc:NM_001075333]
Coordinates
chr7:18974221-18975776:-
Coord C1 exon
chr7:18975657-18975776
Coord A exon
chr7:18974531-18974581
Coord C2 exon
chr7:18974221-18974303
Length
51 bp
Sequences
Splice sites
3' ss Seq
CTTTTCTTTCCACTTGCCAGGTG
3' ss Score
9.3
5' ss Seq
TCAGTGAGT
5' ss Score
7.68
Exon sequences
Seq C1 exon
GGGGAGAAGCGAGCAGATATCCAACTGAACAGCTTTGGTTTCTACACCAACGGCTCCCTGGAGGTGAATCTGAGCCTCCTGAGGCTAGGCCGCCAGGATACAGAAGAGAAGGCCCCGCTG
Seq A exon
GTGGGGTTCAGTCTGACCCGGGTGAGATCTGGCAGCATTCGCTCCTACTCA
Seq C2 exon
AATCGGGACTCCCATGAGTGTCCTCTCCGGAAAAACAGTAGCAGCCTCCTGGTTCTCTTCCTCATCAACACCAAGGATCTGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017291-'6-5,'6-4,8-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.143
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTCTACACCAACGGCTCCC
R:
GAGGAAGAGAACCAGGAGGCT
Band lengths:
146-197
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development