HsaEX0028234 @ hg19
Exon Skipping
Gene
ENSG00000125734 | GPR108
Description
G protein-coupled receptor 108 [Source:HGNC Symbol;Acc:17829]
Coordinates
chr19:6734194-6736722:-
Coord C1 exon
chr19:6736603-6736722
Coord A exon
chr19:6735919-6735969
Coord C2 exon
chr19:6734194-6734318
Length
51 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTTCCACCCACCAGGTG
3' ss Score
9.73
5' ss Seq
TCAGTGAGT
5' ss Score
7.68
Exon sequences
Seq C1 exon
GGGGAGAAGCGAGCGGACATCCAGCTGAACAGCTTCGGTTTCTACACCAATGGCTCTCTGGAGGTGGAGTTGAGCGTCCTGCGGCTGGGCCTCCGGGAGGCAGAAGAGAAGTCCCTGCTG
Seq A exon
GTGGGGTTCAGTCTCAGCCGGGTTCGGTCTGGCAGAGTTCGCTCCTATTCA
Seq C2 exon
GGTCCAGGTGCGGAAGTATGGAGAGCAGAAGACGTTGTTTATCTTTCCCGGGCTCCTCCCGGAAGCACCCTCCAAACCAGGGCTCCCGAAGCCACAGGCCACAGTCCCCCGCAAGGTGGATGGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000125734_MULTIEX1-1/2=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.442
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAATGGCTCTCTGGAGGTGGA
R:
GGAGGAGCCCGGGAAAGATAA
Band lengths:
132-183
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)