DreEX0035776 @ danRer10
Exon Skipping
Gene
ENSDARG00000103200 | gpr107
Description
G protein-coupled receptor 107 [Source:ZFIN;Acc:ZDB-GENE-061103-130]
Coordinates
chr5:31886627-31889333:-
Coord C1 exon
chr5:31889211-31889333
Coord A exon
chr5:31888910-31888960
Coord C2 exon
chr5:31886627-31886715
Length
51 bp
Sequences
Splice sites
3' ss Seq
ATTTTGTTTTTTCCCCCCAGATT
3' ss Score
11.62
5' ss Seq
CTGGTCAGT
5' ss Score
6.6
Exon sequences
Seq C1 exon
GATGACATCCGTCAGCGGGTCCACCTGAACACTTTCGGCTTTTATAAAGATGGTTACATGAGTATGAACATGAGCCACCTCAGCTTCACTGGTGGCAAGATGGACAACATTGACAGCTCCACG
Seq A exon
ATTGGTTTCAGCCTTGATCGTGTAAACAATAATGGTTTCTCTACATACCTG
Seq C2 exon
GATGAGGGTCTAGATTACTGTCCTCTGAAAAAGGATCCAAGTAGTAGTTTCGCTGGAGTGCTTCTCTTACTGGACTTTAAGCATAATCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000103200-'4-2,'4-1,5-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGTATGAACATGAGCCACCT
R:
AGAGAAGCACTCCAGCGAAAC
Band lengths:
132-183
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]