BtaEX6046697 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002319 | HMCN2
Description
hemicentin 2 [Source:HGNC Symbol;Acc:HGNC:21293]
Coordinates
chr11:100770600-100771684:+
Coord C1 exon
chr11:100770600-100770662
Coord A exon
chr11:100770775-100770897
Coord C2 exon
chr11:100771550-100771684
Length
123 bp
Sequences
Splice sites
3' ss Seq
GACCCCTCCCCTCCCCGCAGACA
3' ss Score
12.56
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
Exon sequences
Seq C1 exon
AAGAGAATGAGGTTGGCTGCCCGGAGGGCTTTGAGCTGGACGCCCAGGGAGAGTTCTGTGTGG
Seq A exon
ACAGGGACGAGTGCTCCGACAGCCCCCGGCCCTGCTCCCACTCCTGCCACAATGCACCTGGCCGCTTCTCCTGCTCCTGCCCGGTTGGCTTCGCCCTGGCCAGGGACGAAAGGACCTGCAGAG
Seq C2 exon
ATGTGGACGAGTGTGCGTGGGAGGCCGACCTCTGCCAAGAGGATCAGCGCTGCGTGAACCTGCTGGGGTCCTACCACTGCCTGCCCGACTGCAGGCCTGGCTTCCGGGTGGCCGCCGATGGAGCCAGTTGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002319-'97-105,'97-104,98-105=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF146701=FXa_inhibition=WD(100=85.7),PF0764510=EGF_CA=PU(0.1=0.0)
C2:
PF0764510=EGF_CA=WD(100=95.7),PF0764510=EGF_CA=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAGAATGAGGTTGGCTGCC
R:
CTTCACAACTGGCTCCATCGG
Band lengths:
198-321
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]