RnoEX6016389 @ rn6
Exon Skipping
Gene
ENSRNOG00000062252 | AABR07072853.4
Description
NA
Coordinates
chr3:10389633-10390506:-
Coord C1 exon
chr3:10390444-10390506
Coord A exon
chr3:10390205-10390327
Coord C2 exon
chr3:10389633-10389767
Length
123 bp
Sequences
Splice sites
3' ss Seq
GTCTCGTGTCTCCCACCCAGACA
3' ss Score
7.1
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
Exon sequences
Seq C1 exon
AAGAAAATGAACTTGGCTGTCCCGAGGGCTTTGAGCTGGATGCCCAGGGAGCGTTTTGTGTGG
Seq A exon
ACAAGGACGAATGCTCAGGGGGTCCCAGTCCCTGCTCCCATACCTGCCGTAATGCTCCCGGCCGTTTCTCCTGCTCCTGCCCCACTGGCTTCTCCCTGGCTTGGGACCGCAGGAACTGTAGAG
Seq C2 exon
ATGTGGACGAGTGTGCAGGAGACACCCACCTCTGCCAGGAGGGGCAGCACTGTGTGAACCTGCTCGGCTCCTATAACTGCCTCCCTTCCTGTAGGCCTGGCTTCCGGGTAACTGCTGACGGAAGCAACTGCGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000062252-'36-46,'36-44,37-46=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAATGAACTTGGCTGTCCCGA
R:
CTTCGCAGTTGCTTCCGTCAG
Band lengths:
194-317
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]