GgaEX6045280 @ galGal3
Exon Skipping
Gene
ENSGALG00000005141 | HMCN1
Description
NA
Coordinates
chr8_random:372169-374006:+
Coord C1 exon
chr8_random:372169-372231
Coord A exon
chr8_random:373522-373641
Coord C2 exon
chr8_random:373872-374006
Length
120 bp
Sequences
Splice sites
3' ss Seq
AAAATGTTTCCTTCCTGCAGATG
3' ss Score
11.17
5' ss Seq
AGGGTAAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
GAGATCGTAACAACCAGTGTCCTGCTGGGTTTGAGTTGAACTCATCTGGGCCTTACTGTACAG
Seq A exon
ATGAAGATGAATGTGCTGTGCGAAATCCCTGTTCCCACACCTGCCACAATGCTGTAGGAACCTACCACTGCTCCTGTCCAAAGGGCCTCACCATTGCTGCAGATGGCAGAATGTGCCAGG
Seq C2 exon
ATGTTGATGAGTGTGTGCTGGGCAGGCACGCCTGCCACACCGACCAGGATTGCGAGAACAGCGCCGGCTCATACCACTGTGTGCTGCGCTGCAGGACTGGCTTCCGTAGGGCAGTGGATGGGCTCAGCTGCCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005141-'113-135,'113-134,117-135=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126622=cEGF=PU(80.0=72.7),PF146701=FXa_inhibition=PU(4.9=9.1)
A:
PF126622=cEGF=PD(15.0=7.3),PF146701=FXa_inhibition=PD(92.7=92.7),PF0764510=EGF_CA=PU(0.1=0.0)
C2:
PF0764510=EGF_CA=WD(100=95.7),PF0764510=EGF_CA=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGATCGTAACAACCAGTGTCCT
R:
GCAGCTGAGCCCATCCAC
Band lengths:
194-314
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]