BtaEX6070401 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015235 | HMCN1
Description
Bos taurus hemicentin 1 (HMCN1), mRNA. [Source:RefSeq mRNA;Acc:NM_001192537]
Coordinates
chr16:68696744-68698979:+
Coord C1 exon
chr16:68696744-68696806
Coord A exon
chr16:68697823-68697942
Coord C2 exon
chr16:68698845-68698979
Length
120 bp
Sequences
Splice sites
3' ss Seq
GGTCTTGTTTCTTCTTCCAGATG
3' ss Score
10.11
5' ss Seq
AAGGTAGTT
5' ss Score
6.44
Exon sequences
Seq C1 exon
GAGAACGCAGTAATCAGTGTCCCCCTGGGTTTGCCTTAGACTCGGTTGGACCCTTTTGTGCTG
Seq A exon
ATGAAAATGAATGTGCCGCAGGGAATCCCTGCTCTCATTCCTGTCACAATGCCATGGGAACCTATTATTGCTCCTGCCCTAAAGGCCTCACCATAGCTGCCGATGGAAGAACTTGTCAAG
Seq C2 exon
ATATTGATGAGTGTGCTTTGGGTGGCTACACCTGCCATGCTGGTCAGGACTGTGATAATACCATCGGATCCTATCGCTGTGTAGTCCACTGTGGAATTGGCTTTCGAAGAACCAGTGATGGCCTGAGTTGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015235-'104-111,'104-110,105-111=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF146701=FXa_inhibition=PU(4.9=9.1)
A:
PF146701=FXa_inhibition=PD(92.7=92.7),PF0764510=EGF_CA=PU(0.1=0.0)
C2:
PF0764510=EGF_CA=WD(100=95.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAACGCAGTAATCAGTGTCCC
R:
GACAACTCAGGCCATCACTGG
Band lengths:
194-314
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]