BtaEX6046746 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002319 | HMCN2
Description
hemicentin 2 [Source:HGNC Symbol;Acc:HGNC:21293]
Coordinates
chr11:100704362-100707243:+
Coord C1 exon
chr11:100704362-100704457
Coord A exon
chr11:100705939-100706115
Coord C2 exon
chr11:100707086-100707243
Length
177 bp
Sequences
Splice sites
3' ss Seq
ATCTCTCTTCTCTTCTCCAGATA
3' ss Score
11.27
5' ss Seq
ATGGTGAGC
5' ss Score
8.27
Exon sequences
Seq C1 exon
TGCCTCCCAACATCGAGCCGGGTCTGGTCAACAAGGCGGTGCTAGAAAATGCCTCCGTGACCTTGGAGTGCCTGGCTTCCGGCGTGCCCCCTCCTG
Seq A exon
ATATCTCCTGGTTTAAGGGCCGCCAGCCTATCTCTGCCTGGGACAGAGCGATGGTGTCAACTGATGGGAGAGTCCTTCTCATTGAGCAAGCCCAGCTTTCTGATGCCGGGAGCTACCGCTGCGTGGCGTCCAATGTGGTGGGCAGCACAGAGCTGCAGTACAGCCTGCGGGTCAATG
Seq C2 exon
TGCCCCCGCGCATCACGCTGCCACCGAGCCTCCCGGGCCCCGTGCTGCTCCACAGCCCGGTGCGGCTGACCTGTGACGCCGCTGGGGCGCCCAGCCCCATGCTGATGTGGCTGAAGGATGGAAACCCCGTGTCCACTGCAGGGACCGCCGGTCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002319-'42-47,'42-46,43-47=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.019
Domain overlap (PFAM):
C1:
PF0767911=I-set=PU(34.1=90.9)
A:
PF0767911=I-set=PD(64.8=95.0)
C2:
PF0767911=I-set=PU(52.3=84.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCTCCCAACATCGAGCC
R:
CGGTCCCTGCAGTGGACA
Band lengths:
243-420
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]