MmuEX6100384 @ mm10
Exon Skipping
Gene
ENSMUSG00000055632 | Hmcn2
Description
hemicentin 2 [Source:MGI Symbol;Acc:MGI:2677838]
Coordinates
chr2:31392130-31394846:+
Coord C1 exon
chr2:31392130-31392225
Coord A exon
chr2:31392962-31393138
Coord C2 exon
chr2:31394689-31394846
Length
177 bp
Sequences
Splice sites
3' ss Seq
ACACGTCTTTTCTCTCCCAGACG
3' ss Score
9.85
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
Exon sequences
Seq C1 exon
TTCCTCCCAACATTGAACCAGGCCCAGTCAACAAGGTGGTTCTGGAGAATGCCTCTGTGACCTTGGAGTGTCTGGCTTCCGGTGTCCCCCCTCCAG
Seq A exon
ACGTCTCCTGGTTCAAGGGTCGCCAGCCCATCTCTACCCAGAGACGGGTGATAGTGTCAGCTGATGGAAGAGTTCTTCATATTGAGCGAGTCCAGCTTTCTGATGCAGGGAGCTACCGCTGTGTGGCGACCAATGTGGCGGGCAGTGCAGGGCTGAAGTATGGCCTACGGGTCAATG
Seq C2 exon
TGCCACCCCGAATTACCCTGCCACCCAACCTACCAGGCCCAGTACTGCTTGGCACACCCTTCCGCCTGACCTGTAATGCCACTGGCACCCCCCGCCCCACCCTGATATGGCTGAAGGATGGAAACCCTGTGTCTCCTGAAGGAATCCCTGGCCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000055632-'46-56,'46-47,48-56=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.050 C2=0.113
Domain overlap (PFAM):
C1:
PF0767911=I-set=PU(34.1=90.9)
A:
PF0767911=I-set=PD(64.8=95.0)
C2:
PF0767911=I-set=PU(54.9=94.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACATTGAACCAGGCCCAGT
R:
TTGAGGCCAGGGATTCCTTCA
Band lengths:
246-423
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types