GgaEX6045319 @ galGal3
Exon Skipping
Gene
ENSGALG00000005141 | HMCN1
Description
NA
Coordinates
chr8_random:292065-297345:+
Coord C1 exon
chr8_random:292065-292166
Coord A exon
chr8_random:293456-293632
Coord C2 exon
chr8_random:297194-297345
Length
177 bp
Sequences
Splice sites
3' ss Seq
TTTTCCATTTAATTTTACAGCTA
3' ss Score
9.82
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
Exon sequences
Seq C1 exon
AACCACCCAGCCTGGAGGATGCAGGGAAAATGTTAAATGAAACAGTGGTTGTGAATAATCCAATCCATCTTGAATGCAGAGCATTGGGGAACCCTCTACCAG
Seq A exon
CTATCACGTGGTACAAAGACAGTCATTCACTCACCAGTGCTGCAAGTGTCACTTTTCTGAACAAGGGTCAGGTTCTGGAGATTGAGGGTGCTCAGATTTCTGACACTGGCATTTATAAGTGTGTGGCTGTCAACATTGCAGGCACAGCTGAGTTGTCCTACAGTCTTCAGGTTCATG
Seq C2 exon
TCCCACCATCAATCTCTGACAGCAGTGACACGGTGACAGCGGTGGTCAATAACCTTGTGCGAATGGAGTGCGAAGCAAGAGGCATCCCTGCACCCATCCTGACATGGCTAAAAGACGGCAGTCCTGTTTCCAGCTTCAGTGATGGACTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005141-'44-57,'44-55,45-57=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.114 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0767911=I-set=PU(31.0=74.3)
A:
PF0767911=I-set=PD(67.9=95.0)
C2:
PF0767911=I-set=PU(53.9=94.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGGAGGATGCAGGGAAAAT
R:
TGAAGTCCATCACTGAAGCTGG
Band lengths:
243-420
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]