BtaEX6070453 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015235 | HMCN1
Description
Bos taurus hemicentin 1 (HMCN1), mRNA. [Source:RefSeq mRNA;Acc:NM_001192537]
Coordinates
chr16:68538235-68541751:+
Coord C1 exon
chr16:68538235-68538336
Coord A exon
chr16:68540894-68541070
Coord C2 exon
chr16:68541600-68541751
Length
177 bp
Sequences
Splice sites
3' ss Seq
CTTTTCTCTTCTCCTTGCAGCTA
3' ss Score
13.26
5' ss Seq
ATGGTTAGT
5' ss Score
7.07
Exon sequences
Seq C1 exon
AGCCACCCAGCCTGGACGATGCAGGGAAGATGCTGAATGAGACCGTGGTGGTGAACAGCCCCGTGCAGCTGGAGTGTAAAGCAGCTGGAACTCCCTCGCCTG
Seq A exon
CTATTACATGGTACAAAGATAATCGTCCACTATCAGATTCCAGTAGTGTGACTTTCTTGAACAGAGGACAGATCATCAATATTGAAAGTGCCCAGATCACAGATGCTGGCATATATAAATGTGTGGCCATCAACTCAGCTGGAGCAACCGAGCTGTTTTACAGTCTGCAGGTCCATG
Seq C2 exon
TGCCCCCATCGATTTTTGGCAGCAATAACATGGTGGCAGTGGTGGTTAATAACCTGGTGAGGTTAGAGTGTGAAGCCAGAGGTATCCCGGCCCCAAGTCTGACCTGGCTGAAAGATGGGAGCCCCGTCACGAGTTTCGTTAATGGGATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015235-'41-50,'41-49,42-50=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.114 A=0.033 C2=0.000
Domain overlap (PFAM):
C1:
PF0767911=I-set=PU(31.0=74.3)
A:
PF0767911=I-set=PD(67.9=95.0)
C2:
PF0767911=I-set=PU(53.9=94.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACCCAGCCTGGACGAT
R:
GAAACTCGTGACGGGGCTC
Band lengths:
237-414
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]