RnoEX0042110 @ rn6
Exon Skipping
Gene
ENSRNOG00000028627 | Hmcn1
Description
hemicentin 1 [Source:RGD Symbol;Acc:1564772]
Coordinates
chr13:68063675-68066154:-
Coord C1 exon
chr13:68066053-68066154
Coord A exon
chr13:68064905-68065081
Coord C2 exon
chr13:68063675-68063826
Length
177 bp
Sequences
Splice sites
3' ss Seq
TTCTCGCCTTCTCCCTTCAGTTC
3' ss Score
10.53
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
Exon sequences
Seq C1 exon
AACCCCCCAGCCTGGATGATGGCGGGAAGATGCTGAACGAGAGCGTGGTGGTGAACAACCCCATTCAGCTGGAGTGTAAAGCCACAGGCAGTCCTGTTCCTG
Seq A exon
TTCTCACATGGTACAAAGACAGCCATCCACTCGCAGGCTCCACAAGTGCAACCTTCCTGAAGAGAGGGCAGATCCTTGAGATTGGAAGTGCTCAGATCTCAGATGCTGGCATCTACAAATGTGTAGCCATCAACTCTGCTGGAGCTACAGAATTGTTTTACAGCCTACAAGTTCATG
Seq C2 exon
TGCCTCCTTCGATCTCAGGGAGCAGTTCCATGGTGGAGGTGGTGGTGAACAATCTAGCAAGGTTAGAATGTGAAGCCAGGGGCATCCCTGCCCCCAGTCTGACCTGGTTGAAAGATGGGAGTCCAGTCTCTAGCTTCTCTAATGGAATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000028627-'47-48,'47-47,48-48
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.229 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0767911=I-set=PU(30.1=71.4)
A:
PF0767911=I-set=PD(68.7=95.0)
C2:
PF0767911=I-set=PU(53.9=94.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCCAGCCTGGATGATGG
R:
TCCATTAGAGAAGCTAGAGACTGGA
Band lengths:
245-422
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]