BtaEX6046770 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002319 | HMCN2
Description
hemicentin 2 [Source:HGNC Symbol;Acc:HGNC:21293]
Coordinates
chr11:100639140-100643182:+
Coord C1 exon
chr11:100639140-100639246
Coord A exon
chr11:100640365-100640485
Coord C2 exon
chr11:100642919-100643182
Length
121 bp
Sequences
Splice sites
3' ss Seq
TGAGCCTGGGCCCGGGCTAGATC
3' ss Score
1.78
5' ss Seq
AAGGTACGA
5' ss Score
9.78
Exon sequences
Seq C1 exon
GGAGGATCCTGCAGAGGGATGACGGCCTCAATGTGCTCCTCAGCATCCCTGACTCTGCCAAGGTCGTGGCCTTTAAGCCTGAGCATTCCGGGCTGTGGTCCATCAAG
Seq A exon
ATCTACAGCAGCGGCCGCCATTCGGTCAGGATCACGGGCATCAGCAACATTGACTTCCGAGCTGGCTTCTCCACTCAGCCCTCCCTGGACCTCAACCACACTATCGAGTGGCCCCTACAAG
Seq C2 exon
GCGTACCCATCTCCCTGGTGATCAACTCCACGGGCCTGCGGGTACCGGGCCTCCTGGACTCAGTGGAGCTCTCACACAGCTCAGGGCGGTCCCTCCTGACTCTGCCCACGCAGCCCCTCTCCAACGGATCAACCCACCAGCTGTGGGGTGGGCCGCCCTTCCACAGCCCCCAGGAGCGTTTCTACCTCAAGGTGAAGGGCAAGGACCATGAAGGAAACCCTCTCCTCCGTGTCTCCGGAGTTTCCTACCGTGGGGTGATTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002319-'5-6,'5-5,6-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.146
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTAAGCCTGAGCATTCCGGG
R:
CCTTCATGGTCCTTGCCCTTC
Band lengths:
250-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]