MmuEX6100407 @ mm9
Exon Skipping
Gene
ENSMUSG00000055632 | Hmcn2
Description
hemicentin 2 [Source:MGI Symbol;Acc:MGI:2677838]
Coordinates
chr2:31199532-31202245:+
Coord C1 exon
chr2:31199532-31199638
Coord A exon
chr2:31199989-31200109
Coord C2 exon
chr2:31201982-31202245
Length
121 bp
Sequences
Splice sites
3' ss Seq
TGGGTGGGGACCTGCACTAGGTA
3' ss Score
0.6
5' ss Seq
AAGGTACCT
5' ss Score
8.49
Exon sequences
Seq C1 exon
GAAGGGTCCTGCAGACGGATGAAGGCCTCAATGTGCTCCTCAACATTCCAGACTCAGCCAAGGTCGTAGCCTTTAAGCCTGAGCACCCAGGACTGTGGGCCATCAAG
Seq A exon
GTATACAGCAGCGGCCGCCACTCAGTGAGGATATCAGGCATCAGCAACATCAACTTCCGAGCCGGCTTCTCCATGCAGCCCTCCCTGGACCTCAACCACACCATCGAGTGGCCTTTGCAAG
Seq C2 exon
GCGTACCCATCTCCCTGGTGATCAACTCTACGGGCCTGCAGGCACCTGGCCACCTTGAGTCTGTGGAGCTCTCACACAGCTCGGGGAGGTCCCTTCTCACTCTGCCCACACAACTCCTCTCCAATGGGTCCACCCATCAGCTGTGGGCTGGGCCACCCTTCCACGTGCCGAAGGAACGCTTTTATCTCAAGGTGAAGGGCAAAGACCACGAGGGGAATCCCCTCCTTCGTGTCTCTGGAGTTTCCTACAGTGCAGTGGCCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000055632-'5-6,'5-5,6-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.034
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTTAAGCCTGAGCACCCAG
R:
GTGGTCTTTGCCCTTCACCTT
Band lengths:
247-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: