BtaEX6046786 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013072 | FUBP3
Description
Bos taurus far upstream element (FUSE) binding protein 3 (FUBP3), mRNA. [Source:RefSeq mRNA;Acc:NM_001101217]
Coordinates
chr11:100949140-100952801:+
Coord C1 exon
chr11:100949140-100949211
Coord A exon
chr11:100950411-100950538
Coord C2 exon
chr11:100951436-100952801
Length
128 bp
Sequences
Splice sites
3' ss Seq
CGCTCTGCTTTGCCTGTCAGGTC
3' ss Score
10.62
5' ss Seq
CAGGTCTGT
5' ss Score
6.84
Exon sequences
Seq C1 exon
GCCAGCAGAGCCAGCCGCAGAGCAGCCAGCCCGACTACAGCAAGGCCTGGGAGGACTACTACAAAAAACAGA
Seq A exon
GTCACGCCGCCAGCGCCGCGCCCCAGGCCAGCACCCCACCGGACTACACCATGGCCTGGGCGGAGTACTACCGGCAGCAGGTCGCCTTCTACGGGCAGACGTTAGGGCAGGCGCAGGCCCCTAGCCAG
Seq C2 exon
GAGCAGTAGGACCCGCGGCTCCCCTCCCTCAAAAGCATTGTGAGCAAAGACCTGTTTGTAACAGAGGTTTTTGGATTTGCAAACCCTTTGATGAAGAACCTTTGTTTTGTTCTGTGAAACACTATATTTAGATTAACAGAATTTTTCTAAAAATCAGGAGAATTAGTTACTAAAAATTGCTGACAATTTTTGTTTCATTATCGTTGTTCGTTACTTCAAATGCGTAAGCTCTGGGAATCTTTTTGGAGCAATACCTGCAGATTCTGGTACCAGAATGTGCCTCAGAGCGGTGACATTTCAACGTGGTGTGTTCTGGTTTTGTTTTGTTTTGTTCGTGTGTCTCTTTATTTACAGTTTTTTCTGTTGCAACAGAAAAAAGTGGCTTGGAAGTCTTAGGTGGTTTGTAACAAATTCTTTAAAAAAATTTTTAAACAGTATTTAAATATTCTTAAATGTGTAAATTCATTAAATGTTTTACTTCTAATTTCTTGTATCTTGGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013072-'31-29,'31-28,32-29=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.880 A=0.581 C2=1.000
Domain overlap (PFAM):
C1:
PF090055=DUF1897=PU(62.9=88.0)
A:
PF090055=DUF1897=PD(34.3=27.9),PF090055=DUF1897=WD(100=74.4)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCTGGGAGGACTACTACAA
R:
CGCATTTGAAGTAACGAACAACGA
Band lengths:
253-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]