HsaEX7005656 @ hg38
Exon Skipping
Gene
ENSG00000107164 | FUBP3
Description
far upstream element binding protein 3 [Source:HGNC Symbol;Acc:HGNC:4005]
Coordinates
chr9:130634667-130638352:+
Coord C1 exon
chr9:130634667-130634738
Coord A exon
chr9:130635999-130636126
Coord C2 exon
chr9:130637014-130638352
Length
128 bp
Sequences
Splice sites
3' ss Seq
TTTCCTCCTTTGTCAACCAGGTC
3' ss Score
9.88
5' ss Seq
CAGGTCTGT
5' ss Score
6.84
Exon sequences
Seq C1 exon
GCCAGCAGAGCCAGCCGCAGAGCAGCCAGCCCAACTACAGCAAGGCCTGGGAAGACTATTACAAAAAACAGA
Seq A exon
GTCACGCCGCCAGCGCTGCTCCTCAGGCCAGCTCCCCACCGGACTACACAATGGCCTGGGCAGAATATTACAGACAGCAGGTCGCTTTCTACGGACAGACGTTAGGGCAGGCGCAGGCCCACAGCCAG
Seq C2 exon
GAGCAGTAGGACAGCGTCCTCGTGGCCAACTCTCCCCTCAAAATCATTGTCAAAGAAAACCTATTTGTAACAGAGGTTTTTACATTTGCAAACCTTTTGATGAAGAACTGTTGTTTTGTTCTGTGAAACACTATATTTAGATTAACGGAATTTTTCTAAAAATCAGGAAAATTAGTTACTAAAAATTGCTGATCATTTTTGTTTCATTATTTTTGTTATTTCAAATGTATAAGCTCTGGGATTCTTTTTGGAGCAATACCTACAAAGTCAGGCACCAGAATGTGCCTCAGAGCTGTGACATTTCAACATGATGGTTTTGGTTTGGTTTGGTTTTGTGTCCTTTTTATTTGCAGTTTTTTCTGTTGCAACAGAAAGTGGCTTGGAAGTCTTAGGTGGTATGTAACAAATTCTTTTTAAAAATTTTAAAGCAGTATTTAAGTATTCTTAAATGTGTAAATTCATTTAATGTTTTACTTCTAATTTCTTGTATCTTGGCTGTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000107164-'47-57,'47-56,50-57=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.880 A=0.558 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGCCTGGGAAGACTATTACA
R:
GAATCCCAGAGCTTATACATTTGAA
Band lengths:
274-402
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains