MmuEX0019740 @ mm10
Exon Skipping
Gene
ENSMUSG00000026843 | Fubp3
Description
far upstream element (FUSE) binding protein 3 [Source:MGI Symbol;Acc:MGI:2443699]
Coordinates
chr2:31614711-31617526:+
Coord C1 exon
chr2:31614711-31614782
Coord A exon
chr2:31615498-31615625
Coord C2 exon
chr2:31616179-31617526
Length
128 bp
Sequences
Splice sites
3' ss Seq
GTCTGTTCTTTGTCCTCCAGGTC
3' ss Score
11.85
5' ss Seq
CAGGTCTGT
5' ss Score
6.84
Exon sequences
Seq C1 exon
GCCAGCAGAGTCAGCCACAGAACAGCCAGCCCGACTACAGCAAGGCCTGGGAGGACTATTACAAAAAGCAGA
Seq A exon
GTCATCCCACCAGTGCTGCCCCACAGGCCAGCTCCCCCCCAGACTACACGATGGCCTGGGCTGAGTACTACAGGCAGCAGGCCGCCTTCTATGGGCAGACTTTAGGGCAGGCTCAGGCCCACAGCCAG
Seq C2 exon
GAGCAGTAGATGGGCATCTGCCGCGGCTCTTCCCCGAAATCAGTGTGAGAGAAACCTGTTTGTTACAGAGATTTTTAGATTTGCAAACCTTTTGATGAAGACCTTTGTTTTGTTCTGTGAAACACTATATTTAGATTAACAGAAATTTTCTAAAAATTGGGAAAATTAGTTACTAAACATTGCTGGTAATTTTTACGTCATGATTTCTTTGTAAATGTGTGAGCTCCGGGGCTCTTGGAGCGAAACCTGCAAGCTCGGGTGCCCAAGCTCTCCTCGGAGCCTGGCATTTCATCACACGATGGCTTTGTCTTGTGTCTTTTTAGTTACAGTTTGGGGTGGGTTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGGGTTTTTGGTTTTGGTTTTTGTTTTCCCTTTTTTTTTTTTTTTTTTCTGTTACAACAGAAAAAATGGCTTGGAAGTCTTAGGTGGTAATGTAACAAATTCTTTAAAAATTTTTGAAGCAGTATTTAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026843-'30-43,'30-42,32-43
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.616 C2=1.000
Domain overlap (PFAM):
C1:
PF090055=DUF1897=PU(73.3=88.0)
A:
PF090055=DUF1897=PD(23.3=16.3),PF090055=DUF1897=WD(100=76.7)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGGGAGGACTATTACAAAAAGCA
R:
CCCCGGAGCTCACACATTTAC
Band lengths:
258-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types