RnoEX0037103 @ rn6
Exon Skipping
Gene
ENSRNOG00000009139 | Fubp3
Description
far upstream element binding protein 3 [Source:RGD Symbol;Acc:1307004]
Coordinates
chr3:10221395-10224247:-
Coord C1 exon
chr3:10224176-10224247
Coord A exon
chr3:10223307-10223434
Coord C2 exon
chr3:10221395-10222753
Length
128 bp
Sequences
Splice sites
3' ss Seq
GTCTGTTGTTTGTCCTCCAGGTC
3' ss Score
11.27
5' ss Seq
CAGGTCTGT
5' ss Score
6.84
Exon sequences
Seq C1 exon
GCCAGCAGAGCCAGCCACAGAACAGCCAGCCCGACTACAGCAAGGCCTGGGAAGACTATTACAAAAAACAGG
Seq A exon
GTCACACCACCAGTGCTGCCCCACAGGCCAGCTCCCCCCCAGACTACACGATGGCCTGGGCCGAGTACTACAGGCAGCAGGCCGCCTTCTATGGGCAGACTTTAGGGCAGGCTCAGGCCCACAGCCAG
Seq C2 exon
GAGCAGTAGATGGGCATCTGCCGCGGCTCTTCCCCGAAATCAGTGTGAGAGAAACCTGTTTGTTACAGAGATTTTTAGATTTGCAAACCTTTCGATGAAGACCTTTGTTTTGTTCTGTGAAACACTATATTTAGATTAACAGAAATTTTCTAAAAATTAGGAAAATTAGTTACTAAACATTGGTAATTTTTGTGTCATGATTTCTTTGTAAATGTGTAAGCTCTGGAGCTCTTTTGGAGCAAAACCTGCAAGCTCAGGTGCCGGAACTCTCCTCAGAGCCTGACATTTCATCAAATGATGGGTTTGTCTTGTGTCTTTTTATTTACAGTTTTGGGTGGTTTTTTTTGTTTTTTTGTTTTTTTGTTTTTTTGTTTTTTTGTTTTTTTTTGTTGGTTTTTTGTTGGGTTTGGGGGGGTTTGGTTTTTTGTTTTGTTTTGTTTTTTGTTTTTTTGTTTTTTTCTGTTACAACAGAAAAAATGGCTTGGAAGTCTTAGGTGGTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009139_MULTIEX1-2/2=1-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.893 A=0.651 C2=0.289
Domain overlap (PFAM):
C1:
PF090055=DUF1897=PU(66.7=88.0)
A:
PF090055=DUF1897=PD(30.3=23.3),PF090055=DUF1897=WD(100=74.4)
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAAGGCCTGGGAAGACTAT
R:
CACATTTACAAAGAAATCATGACACA
Band lengths:
250-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]